HL_8P4V_004
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CUUCG
- Length
- 5 nucleotides
- Bulged bases
- 8P4V|1|1|U|133, 8P4V|1|1|C|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_004 not in the Motif Atlas
- Homologous match to HL_8C3A_004
- Geometric discrepancy: 0.2505
- The information below is about HL_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_86929.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8P4V|1|1|C|132
8P4V|1|1|U|133
8P4V|1|1|U|134
8P4V|1|1|C|135
8P4V|1|1|G|136
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AI
- 60S ribosomal protein L35-A
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain DA
- 60S ribosomal protein L26-A
- Chain v
- 60S ribosomal protein L15-A
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