HL_8P4V_015
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GUGUAAAAC
- Length
- 9 nucleotides
- Bulged bases
- 8P4V|1|1|U|689, 8P4V|1|1|A|691
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_015 not in the Motif Atlas
- Homologous match to HL_8P9A_127
- Geometric discrepancy: 0.077
- The information below is about HL_8P9A_127
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_18470.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8P4V|1|1|G|686
8P4V|1|1|U|687
8P4V|1|1|G|688
8P4V|1|1|U|689
8P4V|1|1|A|690
8P4V|1|1|A|691
8P4V|1|1|A|692
8P4V|1|1|A|693
8P4V|1|1|C|694
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 4
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 9
- 60S ribosomal protein L26-A
- Chain l
- 60S ribosomal protein L4-A
- Chain t
- 60S ribosomal protein L13-A
- Chain v
- 60S ribosomal protein L15-A
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