HL_8P4V_095
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- GAUCAGAUACC
- Length
- 11 nucleotides
- Bulged bases
- 8P4V|1|A|U|1004
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_095 not in the Motif Atlas
- Homologous match to HL_8P9A_211
- Geometric discrepancy: 0.1027
- The information below is about HL_8P9A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_38491.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 11
Unit IDs
8P4V|1|A|G|997
8P4V|1|A|A|998
8P4V|1|A|U|999
8P4V|1|A|C|1000
8P4V|1|A|A|1001
8P4V|1|A|G|1002
8P4V|1|A|A|1003
8P4V|1|A|U|1004
8P4V|1|A|A|1005
8P4V|1|A|C|1006
8P4V|1|A|C|1007
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain P
- 40S ribosomal protein S14-B
- Chain b
- Small ribosomal subunit protein eS26B
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