HL_8P4V_114

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

8P4V|1|AR|C|200

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_114 not in the Motif Atlas

Homologous match to HL_8P9A_117

Geometric discrepancy: 0.0781

The information below is about HL_8P9A_117

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8P4V|1|AR|U|194
8P4V|1|AR|U|195
8P4V|1|AR|G|196
8P4V|1|AR|G|197
8P4V|1|AR|A|198
8P4V|1|AR|A|199
8P4V|1|AR|C|200
8P4V|1|AR|A|201

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DA

60S ribosomal protein L26-A

Chain DG

60S ribosomal protein L32