HL_8P4V_129

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8P4V|1|AR|U|879, 8P4V|1|AR|A|883, 8P4V|1|AR|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_129 not in the Motif Atlas

Homologous match to HL_8P9A_132

Geometric discrepancy: 0.0627

The information below is about HL_8P9A_132

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8P4V|1|AR|A|876
8P4V|1|AR|C|877
8P4V|1|AR|G|878
8P4V|1|AR|U|879
8P4V|1|AR|G|880
8P4V|1|AR|C|881
8P4V|1|AR|A|882
8P4V|1|AR|A|883
8P4V|1|AR|A|884
8P4V|1|AR|U|885

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CE

60S ribosomal protein L3

Chain CR

60S ribosomal protein L17-A

Chain DL

60S ribosomal protein L37-A