HL_8P4V_130

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8P4V|1|AR|A|913, 8P4V|1|AR|G|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_130 not in the Motif Atlas

Homologous match to HL_8P9A_133

Geometric discrepancy: 0.0425

The information below is about HL_8P9A_133

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8P4V|1|AR|G|910
8P4V|1|AR|C|911
8P4V|1|AR|G|912
8P4V|1|AR|A|913
8P4V|1|AR|A|914
8P4V|1|AR|A|915
8P4V|1|AR|G|916
8P4V|1|AR|A|917
8P4V|1|AR|C|918

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CD

60S ribosomal protein L2-A

Chain CP

60S ribosomal protein L15-A

Chain DL

60S ribosomal protein L37-A