HL_8P4V_131
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- CCUCAG
- Length
- 6 nucleotides
- Bulged bases
- 8P4V|1|AR|C|959, 8P4V|1|AR|U|960, 8P4V|1|AR|C|961, 8P4V|1|AR|A|962
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_131 not in the Motif Atlas
- Homologous match to HL_8P9A_134
- Geometric discrepancy: 0.0638
- The information below is about HL_8P9A_134
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_70782.2
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 4
Unit IDs
8P4V|1|AR|C|958
8P4V|1|AR|C|959
8P4V|1|AR|U|960
8P4V|1|AR|C|961
8P4V|1|AR|A|962
8P4V|1|AR|G|963
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain DC
- 60S ribosomal protein L28
- Chain DD
- 60S ribosomal protein L29
- Chain DQ
- 60S ribosomal protein L42-A
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