HL_8P4V_151

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

8P4V|1|AR|U|1925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_151 not in the Motif Atlas

Homologous match to HL_8P9A_154

Geometric discrepancy: 0.0495

The information below is about HL_8P9A_154

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.5

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

8P4V|1|AR|C|1923
8P4V|1|AR|U|1924
8P4V|1|AR|U|1925
8P4V|1|AR|C|1926
8P4V|1|AR|G|1927
8P4V|1|AR|G|1928

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DP

60S ribosomal protein L41-A

Chain DR

60S ribosomal protein L43-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA