HL_8P4V_160

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CCAUUCGG

Length

8 nucleotides

Bulged bases

8P4V|1|AR|A|2569, 8P4V|1|AR|U|2570

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_160 not in the Motif Atlas

Homologous match to HL_8C3A_054

Geometric discrepancy: 0.2738

The information below is about HL_8C3A_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8P4V|1|AR|C|2567
8P4V|1|AR|C|2568
8P4V|1|AR|A|2569
8P4V|1|AR|U|2570
8P4V|1|AR|U|2571
8P4V|1|AR|C|2572
8P4V|1|AR|G|2573
8P4V|1|AR|G|2574

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DB

60S ribosomal protein L27-A