HL_8P4V_162
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UUAAACGAUAACG
- Length
- 13 nucleotides
- Bulged bases
- 8P4V|1|AR|A|2637, 8P4V|1|AR|C|2644
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_162 not in the Motif Atlas
- Homologous match to HL_8P9A_166
- Geometric discrepancy: 0.041
- The information below is about HL_8P9A_166
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_02042.1
- Basepair signature
- cWW-tSH-tHH-tWW-F-F-F
- Number of instances in this motif group
- 12
Unit IDs
8P4V|1|AR|U|2633
8P4V|1|AR|U|2634
8P4V|1|AR|A|2635
8P4V|1|AR|A|2636
8P4V|1|AR|A|2637
8P4V|1|AR|C|2638
8P4V|1|AR|G|2639
8P4V|1|AR|A|2640
8P4V|1|AR|U|2641
8P4V|1|AR|A|2642
8P4V|1|AR|A|2643
8P4V|1|AR|C|2644
8P4V|1|AR|G|2645
Current chains
- Chain AR
- 25S ribosomal RNA
Nearby chains
- Chain CL
- 60S ribosomal protein L10
- Chain CV
- 60S ribosomal protein L21-A
- Chain DD
- 60S ribosomal protein L29
Coloring options: