HL_8P4V_174

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8P4V|1|AR|G|3116, 8P4V|1|AR|C|3120

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_174 not in the Motif Atlas

Homologous match to HL_8P9A_178

Geometric discrepancy: 0.0429

The information below is about HL_8P9A_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

8P4V|1|AR|C|3110
8P4V|1|AR|U|3111
8P4V|1|AR|G|3112
8P4V|1|AR|A|3113
8P4V|1|AR|A|3114
8P4V|1|AR|C|3115
8P4V|1|AR|G|3116
8P4V|1|AR|C|3117
8P4V|1|AR|C|3118
8P4V|1|AR|U|3119
8P4V|1|AR|C|3120
8P4V|1|AR|U|3121
8P4V|1|AR|A|3122
8P4V|1|AR|A|3123
8P4V|1|AR|G|3124

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain CK

60S ribosomal protein L9-A

Chain CQ

60S ribosomal protein L16-A

Chain DO

Ubiquitin-60S ribosomal protein L40