HL_8P4V_179
3D structure
- PDB id
- 8P4V (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with HaterumaimideQ
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.16 Å
Loop
- Sequence
- UUCCCGUCCGAUCA
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P4V_179 not in the Motif Atlas
- Geometric match to HL_5TBW_238
- Geometric discrepancy: 0.0737
- The information below is about HL_5TBW_238
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_81622.1
- Basepair signature
- cWW-cWS-F-tSW-F-tSH-tSH-cWW-F-F
- Number of instances in this motif group
- 2
Unit IDs
8P4V|1|AS|U|32
8P4V|1|AS|U|33
8P4V|1|AS|C|34
8P4V|1|AS|C|35
8P4V|1|AS|C|36
8P4V|1|AS|G|37
8P4V|1|AS|U|38
8P4V|1|AS|C|39
8P4V|1|AS|C|40
8P4V|1|AS|G|41
8P4V|1|AS|A|42
8P4V|1|AS|U|43
8P4V|1|AS|C|44
8P4V|1|AS|A|45
Current chains
- Chain AS
- 5S ribosomal RNA
Nearby chains
- Chain AR
- Large subunit ribosomal RNA; LSU rRNA
- Chain CG
- 60S ribosomal protein L5
- Chain CM
- Large ribosomal subunit protein uL5B
- Chain sM
- Suppressor protein STM1
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