3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
CCUGAGAAACGG
Length
12 nucleotides
Bulged bases
8P4V|1|sR|C|402, 8P4V|1|sR|G|403
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P4V_194 not in the Motif Atlas
Homologous match to HL_8P9A_199
Geometric discrepancy: 0.0687
The information below is about HL_8P9A_199
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_06226.4
Basepair signature
cWW-F-F-F-F-F-F-F
Number of instances in this motif group
4

Unit IDs

8P4V|1|sR|C|393
8P4V|1|sR|C|394
8P4V|1|sR|U|395
8P4V|1|sR|G|396
8P4V|1|sR|A|397
8P4V|1|sR|G|398
8P4V|1|sR|A|399
8P4V|1|sR|A|400
8P4V|1|sR|A|401
8P4V|1|sR|C|402
8P4V|1|sR|G|403
8P4V|1|sR|G|404

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain d4
40S ribosomal protein S24-A
Chain s4
40S ribosomal protein S4-A
Chain s6
40S ribosomal protein S6-A
Chain s8
40S ribosomal protein S8-A

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