HL_8P4V_198

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

AAUGUAAAUACCU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_198 not in the Motif Atlas

Homologous match to HL_8P9A_203

Geometric discrepancy: 0.0641

The information below is about HL_8P9A_203

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_68749.1

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P4V|1|sR|A|520
8P4V|1|sR|A|521
8P4V|1|sR|U|522
8P4V|1|sR|G|523
8P4V|1|sR|U|524
8P4V|1|sR|A|525
8P4V|1|sR|A|526
8P4V|1|sR|A|527
8P4V|1|sR|U|528
8P4V|1|sR|A|529
8P4V|1|sR|C|530
8P4V|1|sR|C|531
8P4V|1|sR|U|532

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain d4

40S ribosomal protein S24-A

Chain s4

40S ribosomal protein S4-A

Chain s9

40S ribosomal protein S9-A