HL_8P4V_210

3D structure

PDB id

8P4V (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with HaterumaimideQ

Experimental method

X-RAY DIFFRACTION

Resolution

3.16 Å

Loop

Sequence

GACUCAACAC

Length

10 nucleotides

Bulged bases

8P4V|1|sR|A|1196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P4V_210 not in the Motif Atlas

Homologous match to HL_8P9A_215

Geometric discrepancy: 0.0767

The information below is about HL_8P9A_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_97521.1

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8P4V|1|sR|G|1188
8P4V|1|sR|A|1189
8P4V|1|sR|C|1190
8P4V|1|sR|U|1191
8P4V|1|sR|C|1192
8P4V|1|sR|A|1193
8P4V|1|sR|A|1194
8P4V|1|sR|C|1195
8P4V|1|sR|A|1196
8P4V|1|sR|C|1197

Current chains

Chain sR

18S ribosomal RNA

Nearby chains

Chain c6

40S ribosomal protein S16-A

Chain d0

Small ribosomal subunit protein uS10

Chain sM

Suppressor protein STM1