3D structure

PDB id
8P4V (explore in PDB, NAKB, or RNA 3D Hub)
Description
80S yeast ribosome in complex with HaterumaimideQ
Experimental method
X-RAY DIFFRACTION
Resolution
3.16 Å

Loop

Sequence
UUUCAAG
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8P4V_215 not in the Motif Atlas
Homologous match to HL_8P9A_220
Geometric discrepancy: 0.0853
The information below is about HL_8P9A_220
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37369.2
Basepair signature
cWW-tSH-F-F-F
Number of instances in this motif group
9

Unit IDs

8P4V|1|sR|U|1396
8P4V|1|sR|U|1397
8P4V|1|sR|U|1398
8P4V|1|sR|C|1399
8P4V|1|sR|A|1400
8P4V|1|sR|A|1401
8P4V|1|sR|G|1402

Current chains

Chain sR
18S ribosomal RNA

Nearby chains

Chain c7
40S ribosomal protein S17-A

Coloring options:


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