HL_8P85_007

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

8P85|1|1|G|218, 8P85|1|1|A|219, 8P85|1|1|G|220

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_007 not in the Motif Atlas

Geometric match to HL_8CRE_007

Geometric discrepancy: 0.0734

The information below is about HL_8CRE_007

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8P85|1|1|G|216
8P85|1|1|U|217
8P85|1|1|G|218
8P85|1|1|A|219
8P85|1|1|G|220
8P85|1|1|A|221
8P85|1|1|A|222
8P85|1|1|U|223
8P85|1|1|C|224

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain 4

5.8S ribosomal RNA; 5.8S rRNA

Chain 9

60S ribosomal protein L26-A

Chain l

60S ribosomal protein L4-A