HL_8P85_129

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

8P85|1|AR|C|959, 8P85|1|AR|U|960, 8P85|1|AR|C|961, 8P85|1|AR|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_129 not in the Motif Atlas

Geometric match to HL_8P9A_134

Geometric discrepancy: 0.0297

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27530.1

Basepair signature

cWW-F-F

Number of instances in this motif group

10

Unit IDs

8P85|1|AR|C|958
8P85|1|AR|C|959
8P85|1|AR|U|960
8P85|1|AR|C|961
8P85|1|AR|A|962
8P85|1|AR|G|963

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain DC

60S ribosomal protein L28

Chain DD

60S ribosomal protein L29

Chain DQ

60S ribosomal protein L42-A