HL_8P85_155

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUAACUAUGAC

Length

11 nucleotides

Bulged bases

8P85|1|AR|A|2256

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_155 not in the Motif Atlas

Geometric match to HL_8CRE_047

Geometric discrepancy: 0.183

The information below is about HL_8CRE_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8P85|1|AR|G|2253
8P85|1|AR|U|2254
8P85|1|AR|A|2255
8P85|1|AR|A|2256
8P85|1|AR|C|2257
8P85|1|AR|U|2258
8P85|1|AR|A|2259
8P85|1|AR|U|2260
8P85|1|AR|G|2261
8P85|1|AR|A|2262
8P85|1|AR|C|2263

Current chains

Chain AR

25S ribosomal RNA

Nearby chains

Chain e0

40S ribosomal protein S30-A

Chain sR

Small subunit ribosomal RNA; SSU rRNA