HL_8P85_219

3D structure

PDB id

8P85 (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Fluorolissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AGAAGGGGGCAACUCCAUCU

Length

20 nucleotides

Bulged bases

8P85|1|sR|C|1700, 8P85|1|sR|A|1701, 8P85|1|sR|A|1702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P85_219 not in the Motif Atlas

Geometric match to HL_8P9A_224

Geometric discrepancy: 0.0226

The information below is about HL_8P9A_224

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_52616.1

Basepair signature

cWW-cWH-cHW-F-cWH-cHW-F-F-tHH-cWH-tWW-cWH-F-tWW-cWH-F-cWH

Number of instances in this motif group

1

Unit IDs

8P85|1|sR|A|1691
8P85|1|sR|G|1692
8P85|1|sR|A|1693
8P85|1|sR|A|1694
8P85|1|sR|G|1695
8P85|1|sR|G|1696
8P85|1|sR|G|1697
8P85|1|sR|G|1698
8P85|1|sR|G|1699
8P85|1|sR|C|1700
8P85|1|sR|A|1701
8P85|1|sR|A|1702
8P85|1|sR|C|1703
8P85|1|sR|U|1704
8P85|1|sR|C|1705
8P85|1|sR|C|1706
8P85|1|sR|A|1707
8P85|1|sR|U|1708
8P85|1|sR|C|1709
8P85|1|sR|U|1710

Current chains

Chain sR

16S ribosomal RNA

Nearby chains

Chain s6

40S ribosomal protein S6-A