HL_8P8M_020

3D structure

PDB id

8P8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast 60S ribosomal subunit, RPL39 deletion

Experimental method

ELECTRON MICROSCOPY

Resolution

2.66 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8P8M|1|A|U|879, 8P8M|1|A|A|883, 8P8M|1|A|A|884

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8M_020 not in the Motif Atlas

Homologous match to HL_8C3A_020

Geometric discrepancy: 0.0924

The information below is about HL_8C3A_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8P8M|1|A|A|876
8P8M|1|A|C|877
8P8M|1|A|G|878
8P8M|1|A|U|879
8P8M|1|A|G|880
8P8M|1|A|C|881
8P8M|1|A|A|882
8P8M|1|A|A|883
8P8M|1|A|A|884
8P8M|1|A|U|885

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QO

60S ribosomal protein L17-A

Chain RJ

60S ribosomal protein L37-A