HL_8P8M_045
3D structure
- PDB id
- 8P8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast 60S ribosomal subunit, RPL39 deletion
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.66 Å
Loop
- Sequence
- UCUAAUUAAAA
- Length
- 11 nucleotides
- Bulged bases
- 8P8M|1|A|A|2138, 8P8M|1|A|A|2139, 8P8M|1|A|U|2140, 8P8M|1|A|A|2144
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P8M_045 not in the Motif Atlas
- Homologous match to HL_8C3A_046
- Geometric discrepancy: 0.109
- The information below is about HL_8C3A_046
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_43613.6
- Basepair signature
- cWW-tWH-tWH-F
- Number of instances in this motif group
- 6
Unit IDs
8P8M|1|A|U|2135
8P8M|1|A|C|2136
8P8M|1|A|U|2137
8P8M|1|A|A|2138
8P8M|1|A|A|2139
8P8M|1|A|U|2140
8P8M|1|A|U|2141
8P8M|1|A|A|2142
8P8M|1|A|A|2143
8P8M|1|A|A|2144
8P8M|1|A|A|2145
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain LF
- 60S ribosomal protein L2-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: