HL_8P8N_024

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

CUUAAUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_024 not in the Motif Atlas

Homologous match to HL_5TBW_024

Geometric discrepancy: 0.1324

The information below is about HL_5TBW_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8P8N|1|A|C|1076
8P8N|1|A|U|1077
8P8N|1|A|U|1078
8P8N|1|A|A|1079
8P8N|1|A|A|1080
8P8N|1|A|U|1081
8P8N|1|A|U|1082
8P8N|1|A|G|1083

Current chains

Chain A

25S rRNA

Nearby chains

Chain LI

60S ribosomal protein L5

Chain QT

60S ribosomal protein L21-A

Chain RB

60S ribosomal protein L29