HL_8P8N_040
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- CGCAGCAG
- Length
- 8 nucleotides
- Bulged bases
- 8P8N|1|A|C|1846, 8P8N|1|A|G|1848, 8P8N|1|A|A|1850
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P8N_040 not in the Motif Atlas
- Homologous match to HL_5TBW_041
- Geometric discrepancy: 0.0855
- The information below is about HL_5TBW_041
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_56817.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8P8N|1|A|C|1844
8P8N|1|A|G|1845
8P8N|1|A|C|1846
8P8N|1|A|A|1847
8P8N|1|A|G|1848
8P8N|1|A|C|1849
8P8N|1|A|A|1850
8P8N|1|A|G|1851
Current chains
- Chain A
- 25S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein eL39
- Chain LH
- 60S ribosomal protein L4-A
- Chain QO
- 60S ribosomal protein L17-A
- Chain RJ
- 60S ribosomal protein L37-A
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