HL_8P8N_048

3D structure

PDB id

8P8N (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39 integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

UCUAAUUAG

Length

9 nucleotides

Bulged bases

8P8N|1|A|U|2298

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P8N_048 not in the Motif Atlas

Homologous match to HL_8C3A_050

Geometric discrepancy: 0.0955

The information below is about HL_8C3A_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27115.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8P8N|1|A|U|2292
8P8N|1|A|C|2293
8P8N|1|A|U|2294
8P8N|1|A|A|2295
8P8N|1|A|A|2296
8P8N|1|A|U|2297
8P8N|1|A|U|2298
8P8N|1|A|A|2299
8P8N|1|A|G|2300

Current chains

Chain A

25S rRNA

Nearby chains

Chain QV

60S ribosomal protein L23-A