HL_8P8N_071
3D structure
- PDB id
- 8P8N (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mouse RPL39 integrated into the yeast 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- UGAAUUGCAGAAUUCCGUGAA
- Length
- 21 nucleotides
- Bulged bases
- 8P8N|1|LD|C|84, 8P8N|1|LD|U|86
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P8N_071 not in the Motif Atlas
- Homologous match to HL_8P4V_073
- Geometric discrepancy: 0.1494
- The information below is about HL_8P4V_073
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_08513.2
- Basepair signature
- cWW-tSH-tSS-tHS-F-F-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
8P8N|1|LD|U|69
8P8N|1|LD|G|70
8P8N|1|LD|A|71
8P8N|1|LD|A|72
8P8N|1|LD|U|73
8P8N|1|LD|U|74
8P8N|1|LD|G|75
8P8N|1|LD|C|76
8P8N|1|LD|A|77
8P8N|1|LD|G|78
8P8N|1|LD|A|79
8P8N|1|LD|A|80
8P8N|1|LD|U|81
8P8N|1|LD|U|82
8P8N|1|LD|C|83
8P8N|1|LD|C|84
8P8N|1|LD|G|85
8P8N|1|LD|U|86
8P8N|1|LD|G|87
8P8N|1|LD|A|88
8P8N|1|LD|A|89
Current chains
- Chain LD
- 5.8S rRNA
Nearby chains
- Chain 2
- Large ribosomal subunit protein eL39
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain QY
- 60S ribosomal protein L26-A
- Chain RH
- 60S ribosomal protein L35-A
- Chain RJ
- 60S ribosomal protein L37-A
Coloring options: