HL_8P9A_028
3D structure
- PDB id
- 8P9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Methyllissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- UUGAUAUGAUG
- Length
- 11 nucleotides
- Bulged bases
- 8P9A|1|1|A|1352, 8P9A|1|1|U|1353, 8P9A|1|1|G|1354, 8P9A|1|1|U|1356
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8P9A_028 not in the Motif Atlas
- Homologous match to HL_8P9A_141
- Geometric discrepancy: 0.3078
- The information below is about HL_8P9A_141
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_29762.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 1
Unit IDs
8P9A|1|1|U|1347
8P9A|1|1|U|1348
8P9A|1|1|G|1349
8P9A|1|1|A|1350
8P9A|1|1|U|1351
8P9A|1|1|A|1352
8P9A|1|1|U|1353
8P9A|1|1|G|1354
8P9A|1|1|A|1355
8P9A|1|1|U|1356
8P9A|1|1|G|1357
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AF
- 60S ribosomal protein L32
- Chain l
- 60S ribosomal protein L4-A
- Chain n
- 60S ribosomal protein L6-A
- Chain y
- 60S ribosomal protein L18-A
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