HL_8P9A_043

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GGUAC

Length

5 nucleotides

Bulged bases

8P9A|1|1|G|1954, 8P9A|1|1|U|1955

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_043 not in the Motif Atlas

Homologous match to HL_5TBW_044

Geometric discrepancy: 0.5019

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

8P9A|1|1|G|1953
8P9A|1|1|G|1954
8P9A|1|1|U|1955
8P9A|1|1|A|2093
8P9A|1|1|C|2094

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain z

60S ribosomal protein L19-A