HL_8P9A_056

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

AACAGAAAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_056 not in the Motif Atlas

Homologous match to HL_8P9A_167

Geometric discrepancy: 0.0856

The information below is about HL_8P9A_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50860.2

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8P9A|1|1|A|2673
8P9A|1|1|A|2674
8P9A|1|1|C|2675
8P9A|1|1|A|2676
8P9A|1|1|G|2677
8P9A|1|1|A|2678
8P9A|1|1|A|2679
8P9A|1|1|A|2680
8P9A|1|1|U|2681

Current chains

Chain 1

25S ribosomal RNA

Nearby chains

Chain i

Suppressor protein STM1

Chain s

Large ribosomal subunit protein uL5B