HL_8P9A_085

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GAUAGUGGC

Length

9 nucleotides

Bulged bases

8P9A|1|A|G|337

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_085 not in the Motif Atlas

Homologous match to HL_8C3A_199

Geometric discrepancy: 0.0418

The information below is about HL_8C3A_199

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_84299.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8P9A|1|A|G|330
8P9A|1|A|A|331
8P9A|1|A|U|332
8P9A|1|A|A|333
8P9A|1|A|G|334
8P9A|1|A|U|335
8P9A|1|A|G|336
8P9A|1|A|G|337
8P9A|1|A|C|338

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A

Chain M

40S ribosomal protein S11-A