HL_8P9A_229

3D structure

PDB id

8P9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

80S yeast ribosome in complex with Methyllissoclimide

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CCUUUG

Length

6 nucleotides

Bulged bases

8P9A|1|A|U|194

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8P9A_229 not in the Motif Atlas

Homologous match to HL_8P9A_193

Geometric discrepancy: 0.2983

The information below is about HL_8P9A_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

8P9A|1|A|C|190
8P9A|1|A|C|191
8P9A|1|A|U|192
8P9A|1|A|U|193
8P9A|1|A|U|194
8P9A|1|A|G|195

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain J

40S ribosomal protein S8-A