HL_8PFR_020

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

ACGUGCAAAU

Length

10 nucleotides

Bulged bases

8PFR|1|A|U|879, 8PFR|1|A|A|883

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_020 not in the Motif Atlas

Homologous match to HL_5TBW_020

Geometric discrepancy: 0.073

The information below is about HL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_39334.8

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

8PFR|1|A|A|876
8PFR|1|A|C|877
8PFR|1|A|G|878
8PFR|1|A|U|879
8PFR|1|A|G|880
8PFR|1|A|C|881
8PFR|1|A|A|882
8PFR|1|A|A|883
8PFR|1|A|A|884
8PFR|1|A|U|885

Current chains

Chain A

25S rRNA

Nearby chains

Chain LG

60S ribosomal protein L3

Chain QO

60S ribosomal protein L17-A

Chain RJ

60S ribosomal protein L37-A