HL_8PFR_021

3D structure

PDB id

8PFR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mouse RPL39L integrated into the yeast 60S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.15 Å

Loop

Sequence

GCGAAAGAC

Length

9 nucleotides

Bulged bases

8PFR|1|A|A|913

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PFR_021 not in the Motif Atlas

Homologous match to HL_8C3A_021

Geometric discrepancy: 0.0947

The information below is about HL_8C3A_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8PFR|1|A|G|910
8PFR|1|A|C|911
8PFR|1|A|G|912
8PFR|1|A|A|913
8PFR|1|A|A|914
8PFR|1|A|A|915
8PFR|1|A|G|916
8PFR|1|A|A|917
8PFR|1|A|C|918

Current chains

Chain A

25S rRNA

Nearby chains

Chain JV

60S ribosomal protein L15-A

Chain LF

60S ribosomal protein L2-A

Chain RJ

60S ribosomal protein L37-A