3D structure

PDB id
8PHJ (explore in PDB, NAKB, or RNA 3D Hub)
Description
cA4-bound Cami1 in complex with 70S ribosome
Experimental method
ELECTRON MICROSCOPY
Resolution
3.67 Å

Loop

Sequence
GAUUAGAUACC
Length
11 nucleotides
Bulged bases
8PHJ|1|A|U|793
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8PHJ_023 not in the Motif Atlas
Homologous match to HL_5J7L_017
Geometric discrepancy: 0.0732
The information below is about HL_5J7L_017
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75293.5
Basepair signature
cWW-F-F-F-F-F-F-F-F
Number of instances in this motif group
11

Unit IDs

8PHJ|1|A|G|786
8PHJ|1|A|A|787
8PHJ|1|A|U|788
8PHJ|1|A|U|789
8PHJ|1|A|A|790
8PHJ|1|A|G|791
8PHJ|1|A|A|792
8PHJ|1|A|U|793
8PHJ|1|A|A|794
8PHJ|1|A|C|795
8PHJ|1|A|C|796

Current chains

Chain A
16S rRNA

Nearby chains

Chain 7
Transfer RNA; tRNA
Chain 8
Transfer RNA; tRNA
Chain 9
mRNA
Chain K
Small ribosomal subunit protein uS11
Chain U
Small ribosomal subunit protein bS21
Chain a
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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