HL_8PHJ_049

3D structure

PDB id

8PHJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

cA4-bound Cami1 in complex with 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.67 Å

Loop

Sequence

ACACGUGGUAU

Length

11 nucleotides

Bulged bases

8PHJ|1|a|G|386, 8PHJ|1|a|G|389

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PHJ_049 not in the Motif Atlas

Homologous match to HL_5J7L_145

Geometric discrepancy: 0.0961

The information below is about HL_5J7L_145

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91503.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8PHJ|1|a|A|382
8PHJ|1|a|C|383
8PHJ|1|a|A|384
8PHJ|1|a|C|385
8PHJ|1|a|G|386
8PHJ|1|a|U|387
8PHJ|1|a|G|388
8PHJ|1|a|G|389
8PHJ|1|a|U|390
8PHJ|1|a|A|391
8PHJ|1|a|U|392

Current chains

Chain a

23S rRNA (2862-MER)

Nearby chains

Chain 8

Transfer RNA; tRNA

Chain w

Large ribosomal subunit protein bL28