HL_8PJ1_008

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

UCAGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ1_008 not in the Motif Atlas

Homologous match to HL_8C3A_200

Geometric discrepancy: 0.1398

The information below is about HL_8C3A_200

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_02837.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8PJ1|1|A|U|416
8PJ1|1|A|C|417
8PJ1|1|A|A|418
8PJ1|1|A|G|419
8PJ1|1|A|G|420
8PJ1|1|A|G|421

Current chains

Chain A

18S rRNA

Nearby chains

Chain B

40S ribosomal protein S11

Chain D

40S ribosomal protein S9

Chain E

40S ribosomal protein S23

Chain J

40S ribosomal protein S15a

Chain L

40S ribosomal protein S2