HL_8PJ1_017
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- UG(PSU)(PSU)CAAAG
- Length
- 9 nucleotides
- Bulged bases
- 8PJ1|1|A|G|821
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ1_017 not in the Motif Atlas
- Homologous match to HL_8C3A_208
- Geometric discrepancy: 0.1113
- The information below is about HL_8C3A_208
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_85367.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8PJ1|1|A|U|820
8PJ1|1|A|G|821
8PJ1|1|A|PSU|822
8PJ1|1|A|PSU|823
8PJ1|1|A|C|824
8PJ1|1|A|A|825
8PJ1|1|A|A|826
8PJ1|1|A|A|827
8PJ1|1|A|G|828
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain T
- 40S ribosomal protein S24
Coloring options: