HL_8PJ1_018
3D structure
- PDB id
- 8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in open codon scanning state (48S-1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- CCCGAGCCG
- Length
- 9 nucleotides
- Bulged bases
- 8PJ1|1|A|G|836, 8PJ1|1|A|G|838, 8PJ1|1|A|C|840
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ1_018 not in the Motif Atlas
- Geometric match to HL_6VMY_004
- Geometric discrepancy: 0.3871
- The information below is about HL_6VMY_004
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_51020.2
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 14
Unit IDs
8PJ1|1|A|C|833
8PJ1|1|A|C|834
8PJ1|1|A|C|835
8PJ1|1|A|G|836
8PJ1|1|A|A|837
8PJ1|1|A|G|838
8PJ1|1|A|C|839
8PJ1|1|A|C|840
8PJ1|1|A|G|841
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 1
- Eukaryotic translation initiation factor 3 subunit B
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain D
- 40S ribosomal protein S9
- Chain T
- 40S ribosomal protein S24
Coloring options: