HL_8PJ1_029

3D structure

PDB id

8PJ1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex in open codon scanning state (48S-1)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8PJ1|1|A|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ1_029 not in the Motif Atlas

Geometric match to HL_4V88_215

Geometric discrepancy: 0.1264

The information below is about HL_4V88_215

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8PJ1|1|A|G|1366
8PJ1|1|A|U|1367
8PJ1|1|A|U|1368
8PJ1|1|A|A|1369
8PJ1|1|A|A|1370
8PJ1|1|A|U|1371
8PJ1|1|A|U|1372
8PJ1|1|A|C|1373

Current chains

Chain A

18S rRNA

Nearby chains

Chain M

40S ribosomal protein S17