HL_8PJ2_020
3D structure
- PDB id
- 8PJ2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex in AUG recognition state after eIF5-induced GTP hydrolysis by eIF2 (48S-2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AGGUGAAAUU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ2_020 not in the Motif Atlas
- Homologous match to HL_8C3A_211
- Geometric discrepancy: 0.1246
- The information below is about HL_8C3A_211
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75293.3
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8PJ2|1|A|A|957
8PJ2|1|A|G|958
8PJ2|1|A|G|959
8PJ2|1|A|U|960
8PJ2|1|A|G|961
8PJ2|1|A|A|962
8PJ2|1|A|A|963
8PJ2|1|A|A|964
8PJ2|1|A|U|965
8PJ2|1|A|U|966
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain 7
- mRNA
- Chain P
- 40S ribosomal protein S14
- Chain Q
- 40S ribosomal protein S26
- Chain V
- 40S ribosomal protein S5
- Chain r
- Eukaryotic translation initiation factor 2 subunit 1
Coloring options: