HL_8PJ4_013

3D structure

PDB id

8PJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex after eIF5 release (48S-4)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

ACUUUAAAUCCUU

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ4_013 not in the Motif Atlas

Homologous match to HL_8C3A_205

Geometric discrepancy: 0.1548

The information below is about HL_8C3A_205

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_05304.2

Basepair signature

cWW-cWW-F-F-tSH-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PJ4|1|A|A|569
8PJ4|1|A|C|570
8PJ4|1|A|U|571
8PJ4|1|A|U|572
8PJ4|1|A|U|573
8PJ4|1|A|A|574
8PJ4|1|A|A|575
8PJ4|1|A|A|576
8PJ4|1|A|U|577
8PJ4|1|A|C|578
8PJ4|1|A|C|579
8PJ4|1|A|U|580
8PJ4|1|A|U|581

Current chains

Chain A

18S rRNA

Nearby chains

Chain D

40S ribosomal protein S9

Chain T

40S ribosomal protein S24