HL_8PJ5_009
3D structure
- PDB id
- 8PJ5 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of human 48S translation initiation complex after eIF2 release prior 60S subunit joining (48S-5)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CCUGAGAAACGG
- Length
- 12 nucleotides
- Bulged bases
- 8PJ5|1|A|C|450, 8PJ5|1|A|G|451
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PJ5_009 not in the Motif Atlas
- Homologous match to HL_8C3A_201
- Geometric discrepancy: 0.0612
- The information below is about HL_8C3A_201
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_06226.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 5
Unit IDs
8PJ5|1|A|C|441
8PJ5|1|A|C|442
8PJ5|1|A|U|443
8PJ5|1|A|G|444
8PJ5|1|A|A|445
8PJ5|1|A|G|446
8PJ5|1|A|A|447
8PJ5|1|A|A|448
8PJ5|1|A|A|449
8PJ5|1|A|C|450
8PJ5|1|A|G|451
8PJ5|1|A|G|452
Current chains
- Chain A
- 18S rRNA
Nearby chains
- Chain C
- 40S ribosomal protein S4, X isoform
- Chain R
- 40S ribosomal protein S8
- Chain S
- 40S ribosomal protein S6
- Chain T
- 40S ribosomal protein S24
Coloring options: