HL_8PJ6_009

3D structure

PDB id

8PJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of human 48S translation initiation complex with initiator tRNA, eIF1A and eIF3 (off-pathway)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

8PJ6|1|A|G|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PJ6_009 not in the Motif Atlas

Homologous match to HL_8C3A_201

Geometric discrepancy: 0.0662

The information below is about HL_8C3A_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8PJ6|1|A|C|441
8PJ6|1|A|C|442
8PJ6|1|A|U|443
8PJ6|1|A|G|444
8PJ6|1|A|A|445
8PJ6|1|A|G|446
8PJ6|1|A|A|447
8PJ6|1|A|A|448
8PJ6|1|A|A|449
8PJ6|1|A|C|450
8PJ6|1|A|G|451
8PJ6|1|A|G|452

Current chains

Chain A

18S rRNA

Nearby chains

Chain C

40S ribosomal protein S4, X isoform

Chain R

40S ribosomal protein S8

Chain S

40S ribosomal protein S6