HL_8PKL_003

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

8PKL|1|7|A|125, 8PKL|1|7|A|126, 8PKL|1|7|A|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_003 not in the Motif Atlas

Homologous match to HL_5J7L_136

Geometric discrepancy: 0.0789

The information below is about HL_5J7L_136

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_82710.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8PKL|1|7|G|123
8PKL|1|7|G|124
8PKL|1|7|A|125
8PKL|1|7|A|126
8PKL|1|7|A|127
8PKL|1|7|C|128

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L34

Chain w

50S ribosomal protein L23