HL_8PKL_011

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

GUGACAGCC

Length

9 nucleotides

Bulged bases

8PKL|1|7|G|329, 8PKL|1|7|A|330, 8PKL|1|7|C|331

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_011 not in the Motif Atlas

Homologous match to HL_5J7L_144

Geometric discrepancy: 0.0729

The information below is about HL_5J7L_144

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_27670.2

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

13

Unit IDs

8PKL|1|7|G|327
8PKL|1|7|U|328
8PKL|1|7|G|329
8PKL|1|7|A|330
8PKL|1|7|C|331
8PKL|1|7|A|332
8PKL|1|7|G|333
8PKL|1|7|C|334
8PKL|1|7|C|335

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain d

50S ribosomal protein L4

Chain x

50S ribosomal protein L24