HL_8PKL_079

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_079 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.1182

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8PKL|1|A|A|320
8PKL|1|A|A|321
8PKL|1|A|C|322
8PKL|1|A|U|323
8PKL|1|A|G|324
8PKL|1|A|A|325
8PKL|1|A|G|326
8PKL|1|A|A|327
8PKL|1|A|C|328
8PKL|1|A|A|329
8PKL|1|A|C|330
8PKL|1|A|G|331
8PKL|1|A|G|332
8PKL|1|A|U|333

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain P

30S ribosomal protein S16

Chain T

Small ribosomal subunit protein bS20