HL_8PKL_105
3D structure
- PDB id
- 8PKL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.09 Å
Loop
- Sequence
- U(PSU)UCCA(MIA)AA
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PKL_105 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.3013
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8PKL|1|W|U|31
8PKL|1|W|PSU|32
8PKL|1|W|U|33
8PKL|1|W|C|34
8PKL|1|W|C|35
8PKL|1|W|A|36
8PKL|1|W|MIA|37
8PKL|1|W|A|38
8PKL|1|W|A|39
Current chains
- Chain W
- tRNA-Trp (P-site)
Nearby chains
- Chain 7
- Large subunit ribosomal RNA; LSU rRNA
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain I
- Small ribosomal subunit protein uS9
- Chain V
- mRNA
- Chain X
- Transfer RNA; tRNA
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