HL_8PKL_113

3D structure

PDB id

8PKL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli paused disome complex (leading 70S non-rotated closed PRE state)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.09 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

8PKL|1|7|U|958, 8PKL|1|7|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8PKL_113 not in the Motif Atlas

Homologous match to HL_5J7L_211

Geometric discrepancy: 0.1144

The information below is about HL_5J7L_211

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8PKL|1|7|PSU|955
8PKL|1|7|G|956
8PKL|1|7|C|957
8PKL|1|7|U|958
8PKL|1|7|A|959
8PKL|1|7|A|960
8PKL|1|7|C|961
8PKL|1|7|G|962

Current chains

Chain 7

23S ribosomal RNA

Nearby chains

Chain 8

5S ribosomal RNA; 5S rRNA

Chain h

50S ribosomal protein L16