HL_8PNN_020
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- ACGUGCAAAU
- Length
- 10 nucleotides
- Bulged bases
- 8PNN|1|1|U|879, 8PNN|1|1|A|883, 8PNN|1|1|A|884
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_020 not in the Motif Atlas
- Homologous match to HL_8P9A_132
- Geometric discrepancy: 0.0564
- The information below is about HL_8P9A_132
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.1
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 11
Unit IDs
8PNN|1|1|A|876
8PNN|1|1|C|877
8PNN|1|1|G|878
8PNN|1|1|U|879
8PNN|1|1|G|880
8PNN|1|1|C|881
8PNN|1|1|A|882
8PNN|1|1|A|883
8PNN|1|1|A|884
8PNN|1|1|U|885
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain AK
- 60S ribosomal protein L37-A
- Chain k
- 60S ribosomal protein L3
- Chain x
- 60S ribosomal protein L17-A
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