HL_8PNN_035
3D structure
- PDB id
- 8PNN (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 80S yeast ribosome in complex with Bromolissoclimide
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUUAUCUUU
- Length
- 9 nucleotides
- Bulged bases
- 8PNN|1|1|U|1687
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8PNN_035 not in the Motif Atlas
- Homologous match to HL_8CRE_036
- Geometric discrepancy: 0.1449
- The information below is about HL_8CRE_036
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- Pseudoknot geometry
- Motif group
- HL_77082.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
8PNN|1|1|G|1680
8PNN|1|1|U|1681
8PNN|1|1|U|1682
8PNN|1|1|A|1683
8PNN|1|1|U|1684
8PNN|1|1|C|1685
8PNN|1|1|U|1686
8PNN|1|1|U|1687
8PNN|1|1|U|1688
Current chains
- Chain 1
- 25S ribosomal RNA
Nearby chains
- Chain 5
- 60S ribosomal protein L22-A
- Chain z
- 60S ribosomal protein L19-A
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